Microbe Decoder

Predict traits from taxonomy

Just provide names of taxa

Predict traits with metabolic networks

Build networks on the fly

Predict traits with machine learning

Use random forests

Search database

Find data for thousands of organisms

Download database

For use in Excel or other programs

History

View past searches and predictions

Help

Tutorials and documentation

About

How this resource was developed

Predict traits from taxonomy

Predict traits with metabolic networks

Predict traits with machine learning

Please upload files and make selections at left

Download results

Prediction Results

Summary
Treemap
Heatmap

Model training and evaluation

Select a model

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Confusion matrix

Values in cells refer to number of organisms in the evaluation set. Higher values in green cells are better.

Detailed metrics

Higher values are better.

Download evaluation metrics

Organisms (gene functions)

Database
File upload

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Traits or models

Browse...

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Show advanced settings

Probability threshold

Enable saving of models

Ignore missing values in database

Proportion of predictors to keep

Proportion of responses to keep

Proportion of responses for model training

Set seed for subsampling

Set number of trees

Set maximum nodes

Weight for positive classes of responses

Name of trait (alphanumeric characters only)

Prediction history

Past Jobs

Search database

Please make selections at left

Download results

Plots

Treemap
Tree
t-SNE

Variable

Layout

Matching organisms are those that are fully colored. Only organisms with genome sequences are shown.

Detailed results

Organism

Databases

Metabolism

Download database

Click below to download the full database in csv format.

Download