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Microbe Decoder
Predict traits from taxonomy
Just provide names of taxa
Predict traits with metabolic networks
Build networks on the fly
Predict traits with machine learning
Use random forests
Search database
Find data for thousands of organisms
Download database
For use in Excel or other programs
History
View past searches and predictions
Help
Tutorials and documentation
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Acknowledgements and notices
CC BY 4.0 license

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Predict traits from taxonomy

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Predict traits with metabolic networks

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Predict traits with machine learning

Please upload files and make selections at left

Model training and evaluation
Confusion matrix
Values in cells refer to number of organisms in the evaluation set. Higher values in green cells are better.
Detailed metrics
Higher values are better.

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Prediction history

Past Jobs

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Search database

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Matching organisms are those that are fully colored. Only organisms with genome sequences are shown.
Detailed results

Download database

Download the database in csv format.

Download the unprocessed (raw) database in csv format.

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